PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008543
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family YABBY
Protein Properties Length: 228aa    MW: 25085.3 Da    PI: 8.0286
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008543genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY231.81.6e-71161893170
        YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...........lleelkveeenlksnveke 89 
                  +  sse++Cyv+C+fC+t+lavsvP +sl+++vtvrCGhCt+llsvn++  + l +++++l++ ++ +                  e e+++s  ++ 
  DCAR_008543  16 LSPSSEKLCYVHCDFCDTVLAVSVPCSSLYMTVTVRCGHCTNLLSVNMRALQ-LPSSTNQLHQLGHSNnffspqinlmvC-----LELEEIRSSPSNM 107
                  6789*****************************************8876544.334444444444433566666665531.....2223333222222 PP

        YABBY  90 esastsv.sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     ++s+ + + ++     e+pr p +++ PekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfg+
  DCAR_008543 108 FLMNQSNpNESPMPVRGAGELPRLPATNKAPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGR 189
                  221111102235689999**************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.4E-6919188IPR006780YABBY protein
SuperFamilySSF470956.55E-8134182IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.9E-5135183IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSSSAAFSSP DHQYHLSPSS EKLCYVHCDF CDTVLAVSVP CSSLYMTVTV RCGHCTNLLS  60
VNMRALQLPS STNQLHQLGH SNNFFSPQIN LMVCLELEEI RSSPSNMFLM NQSNPNESPM  120
PVRGAGELPR LPATNKAPEK RQRVPSAYNR FIKEEIQRIK AGNPDISHRE AFSAAAKNWA  180
HFPHIHFGRL PDQSVKKPNV CQQDGSDDAA KNDGFRAAAS VGISPYN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090395.11e-111PREDICTED: axial regulator YABBY 1
SwissprotO221527e-79YAB1_ARATH; Axial regulator YABBY 1
TrEMBLA0A068VGH31e-111A0A068VGH3_COFCA; Uncharacterized protein
STRINGVIT_15s0048g00550.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-80YABBY family protein